Articles related to "Molecular Dynamics"
A Compelling Force
This article develops the expressions used to calculate the forces in a planetary system model.
force • gravity • simulation • planets • evaluation
This article develops the expressions used to calculate the forces in a planetary system model.
force • gravity • simulation • planets • evaluation
Computer Simulation of Biological Systems
This article represents a starting point for surveying recent efforts in biological simulations.
biology • simulation • biological • dna • protein folding
This article represents a starting point for surveying recent efforts in biological simulations.
biology • simulation • biological • dna • protein folding
Integrating Newton's Equations
This article describes the requirements for an integration algorithm and the advantages of the Verlet version of the software.
velocity • verlet • newton • equations of motion • integration
This article describes the requirements for an integration algorithm and the advantages of the Verlet version of the software.
velocity • verlet • newton • equations of motion • integration
Methods for Simulating Collisionless Matter
This article discusses numerical methods for simulating systems of collisionless matter.
collisionless • classical dynamics • molecular dynamics • particle • particle-mesh
This article discusses numerical methods for simulating systems of collisionless matter.
collisionless • classical dynamics • molecular dynamics • particle • particle-mesh
Molecular Dynamics Simulation of Ionic Channels
This article discusses recent molecular dynamics studies conducted to gain a better understanding of ionic channels in lipid bilayers.
molecular dynamics • simulation • classical • annealing • bilayers
This article discusses recent molecular dynamics studies conducted to gain a better understanding of ionic channels in lipid bilayers.
molecular dynamics • simulation • classical • annealing • bilayers
Molecular Modeling ... a Cup of Joe?
This article describes MDModel, one of the earliest Java-based molecular dynamics applications.
molecular • dynamics • java • object-oriented • simulation
This article describes MDModel, one of the earliest Java-based molecular dynamics applications.
molecular • dynamics • java • object-oriented • simulation
More On DNA Simulation
This article discusses some DNA simulation studies being carried out in Sweden.
dna • simulation • molecular dynamics • biology • chemistry
This article discusses some DNA simulation studies being carried out in Sweden.
dna • simulation • molecular dynamics • biology • chemistry
More on Java-Based Molecular Dynamics
This article reviews the Java-based molecular dynamics codes developed at Boston University's Center for Polymer Studies.
polymer • java • molecular dynamics • simulation • lennard-jones
This article reviews the Java-based molecular dynamics codes developed at Boston University's Center for Polymer Studies.
polymer • java • molecular dynamics • simulation • lennard-jones
More on Periodic Boundary Conditions
This article concludes a two-part series about the use of periodic boundary conditions in classical simulations.
periodic boundary conditions • molecular dynamics • simulation • neighbor lists • verlet
This article concludes a two-part series about the use of periodic boundary conditions in classical simulations.
periodic boundary conditions • molecular dynamics • simulation • neighbor lists • verlet
N-Body Simulation Methods
This article discusses N-body simulation methods.
n-body • simulation • classical • astronomy • chemistry
This article discusses N-body simulation methods.
n-body • simulation • classical • astronomy • chemistry
Object-Oriented Simulation
This article briefly describes some of the advantages of object-oriented program design.
simulation • object-oriented • java • c++ • c
This article briefly describes some of the advantages of object-oriented program design.
simulation • object-oriented • java • c++ • c
Out One Side and In the Other -- Periodic Boundary Conditions
This article begins describing the advantages of employing periodic boundary conditions in classical simulations.
molecular dynamics • simulation • computation • calculation • boundary conditions
This article begins describing the advantages of employing periodic boundary conditions in classical simulations.
molecular dynamics • simulation • computation • calculation • boundary conditions
Parallel Protein Folding
This article discusses a recent study which made strides in simulating protein folding.
protein folding • kollman • molecular dynamics • parallel • load balancing
This article discusses a recent study which made strides in simulating protein folding.
protein folding • kollman • molecular dynamics • parallel • load balancing
Reviewing Protein Folding
This article reviews simulation work done on the protein folding problem by researchers at Columbia University in New York.
protein • folding • simulation • monte carlo • molecular dynamics
This article reviews simulation work done on the protein folding problem by researchers at Columbia University in New York.
protein • folding • simulation • monte carlo • molecular dynamics
Rocketing into the New Millenium On the Nanotube
This article examines a simulation study of carbon nanotubes conducted by NASA physicists.
nasa • nanotubes • simulations • quantum • molecular dynamics
This article examines a simulation study of carbon nanotubes conducted by NASA physicists.
nasa • nanotubes • simulations • quantum • molecular dynamics
Simulation Studies of Protein Folding
This article discusses the special challenges presented by studying protein folding via computer simulation.
protein • folding • peptide • amino acid • molecular dynamics
This article discusses the special challenges presented by studying protein folding via computer simulation.
protein • folding • peptide • amino acid • molecular dynamics
So, What's It Good For, Anyway?
This article begins a discussion of how to obtain meaningful results from a classical simulation.
molecular dynamics • dynamic • static • solar system • simulation
This article begins a discussion of how to obtain meaningful results from a classical simulation.
molecular dynamics • dynamic • static • solar system • simulation
Tools of the Trade -- The Planets Problem
This article begins a discussion of the problem of modeling a planetary system as a means of illustrating the basics of scientific simulation.
planets • newton • equations of motion • integration • solve
This article begins a discussion of the problem of modeling a planetary system as a means of illustrating the basics of scientific simulation.
planets • newton • equations of motion • integration • solve
Welcome to the Neighborhood ... Hope You Don't Stay Long
This article describes the basic principles involved in using a neighbor list to reduce computational time in a classical simulation.
molecular dynamics • verlet • list • neighbor list • particles
This article describes the basic principles involved in using a neighbor list to reduce computational time in a classical simulation.
molecular dynamics • verlet • list • neighbor list • particles
Won't You Be My Neighbor?
This article begins a discussion of how the use of neighbor lists can significantly reduce the computational cost of a planetary simulation.
neighbor list • molecular dynamics • forcefield • cutoff • verlet
This article begins a discussion of how the use of neighbor lists can significantly reduce the computational cost of a planetary simulation.
neighbor list • molecular dynamics • forcefield • cutoff • verlet
Wrapping Up the Planets
This article concludes a several-weeks-long look at an example solar system simulation problem.
simulation • neighbor list • verlet • forces • forcefield
This article concludes a several-weeks-long look at an example solar system simulation problem.
simulation • neighbor list • verlet • forces • forcefield
Chemistry in the Fast Lane
This piece describes, in general terms, one of the more common applications of parallel computing techniques to chemistry simulation research. In addition, several URL's are provided which include vivid examples of the power of parallelism for computational chemists.
computational • chemistry • parallel • mpi • parallelism
This piece describes, in general terms, one of the more common applications of parallel computing techniques to chemistry simulation research. In addition, several URL's are provided which include vivid examples of the power of parallelism for computational chemists.
computational • chemistry • parallel • mpi • parallelism
Simulating Biological Building Blocks
This article discusses simulation methods used in the study of chemical systems with biological importance.
simulation • quantum • molecular • dynamics • monte carlo
This article discusses simulation methods used in the study of chemical systems with biological importance.
simulation • quantum • molecular • dynamics • monte carlo
Other Problems in Biological Simulation
This article discusses the study of lipid membranes via computer simulation.
lipid • bilayer • dynamics • molecular • atomistic
This article discusses the study of lipid membranes via computer simulation.
lipid • bilayer • dynamics • molecular • atomistic
Quantum Simulation of Alkanes and Proteins
This piece discusses different types of quantum calculations used to study small biological molecules, namely alkanes and proteins.
alkane • hydrocarbon • protein • amino • biology
This piece discusses different types of quantum calculations used to study small biological molecules, namely alkanes and proteins.
alkane • hydrocarbon • protein • amino • biology
The Subject is Physics
Explore the dynamics of nature from the microscopic to the macroscopic on the Internet.
physics • physical science • cat scans • mri • laser
Explore the dynamics of nature from the microscopic to the macroscopic on the Internet.
physics • physical science • cat scans • mri • laser
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